OpenHI configuration file¶
Location¶
static/OpenHI_conf_example.ini
or static/OpenHI_conf.ini
The file static/OpenHI_conf_example.ini
is provided in the source code. However,
the configuration may differ from machine to machine. Therefore we provide local and
external configuration file which is static/OpenHI_conf.ini
. If local configuration
is to be used, one should copy the example file and make their own copy of the
configuration file according to the example file.
Database module¶
Name: db host: MySQL database address
port: MySQL database port (default = 3306)
user: Username of the MySQL database
passed: Password of the MySQL database
database: MySQL schema name
Framework¶
Name: framework
host: Intended serving address. Use 127.0.0.1 for locally testing on the machine and 0.0.0.0 for local network test.
port: Testing port. Flask’s default is
5000
, HTTP default is80
.debug: Enable or disable Flask’s debug mode with value of ‘True’ or ‘False’.
reloader: Enable or disable Flask’s reloader with value of ‘True’ or ‘False’.
Annotation project configuration¶
Name: project
pslv: maximum presegmentation level (start from 1)
pslv_val: sub-region average value of each pslv
Note: pslv = pre-segmentation level
Annotator viewer initialization configuration¶
Name: viewer_init
slide_id: maximum presegmentation level (start from 1)
viewer_coor: sub-region average value of each pslv
SSH configuration used to download metadata from remote server¶
Name: viewer_init
hostname: (Remote server address)
port: (The port used to download data)
username: (The username used to connect remote server)
password: (Password of the user)