OpenHI is an open source platform for development of digital pathology. OpenHI can:
Annotate with different level of gradings. For example (G1, G2, G3) or (0, 1)
Provide different sizes of pre-defined segmentation segments with superpixel segmentation algorithm .
Fluidly view the whole-slide image from different vendors. Thanks to OpenSlide
Provide option to create a list of focused region.
Provide accompanying slide information parsed from GDC XML format.
- OpenHI Installation and Usage
- OpenHI Modules
- OpenHI Image Processing APIs
- Legacy APIs
How to cite OpenHI¶
Puttapirat Pargorn, Haichuan Zhang, Yuchen Lian, Chunbao Wang, Xiangrong Zhang, Lixia Yao, Chen Li, “OpenHI - An open source framework for annotating histopathological image,” 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Madrid, Spain, 2018, pp. 1076-1082.