OpenHI Documentation

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OpenHI is an open source platform for development of digital pathology. OpenHI can:

  1. Annotate with different level of gradings. For example (G1, G2, G3) or (0, 1)

  2. Provide different sizes of pre-defined segmentation segments with superpixel segmentation algorithm .

  3. Fluidly view the whole-slide image from different vendors. Thanks to OpenSlide

  4. Provide option to create a list of focused region.

  5. Provide accompanying slide information parsed from GDC XML format.

How to cite OpenHI

Puttapirat Pargorn, Haichuan Zhang, Yuchen Lian, Chunbao Wang, Xiangrong Zhang, Lixia Yao, Chen Li, “OpenHI - An open source framework for annotating histopathological image,” 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Madrid, Spain, 2018, pp. 1076-1082.

DOI: 10.1109/BIBM.2018.8621393

Source code

OpenHI is available at GitLab under GNU LGPL v3.0.

Indices and tables